Hort. Sci. (Prague), 2018, 45(1):1-10 | DOI: 10.17221/153/2016-HORTSCI

Expression analysis of NAC genes during the growth and ripening of applesOriginal Paper

Qijing Zhang1,2, Tong Li1, Lijie Zhang1, Wenxuan Dong*,1, Aide Wang1
1 Shenyang Agricultural University, Shenyang, China
2 Liaoning Institute of Pomology, Yingkou, China

Plant-specific NAC transcription factors (TFs) play crucial roles in various pathways related to the stress response. However, to date, little information regarding NAC gene regulation during fruit ripening is available for the apple (Malus domestica). Here, we report that 13 out of 182 MdNAC genes were differentially expressed during the stages of fruit growth and ripening. Sequence analysis indicates that these 13 MdNAC genes harbour distinct structures and potentially diverse functions. The expression of both MdNAC1a and MdNAC78 was repressed by ethylene and induced by 1-MCP during storage. MdNAC2, MdNAC26, MdNAC41, MdNAC57, MdNAC80, MdNAC91, MdNAC119 and MdNAC141 were up-regulated by ethylene and their transcription mirrored ethylene production rates during storage. MdNAC1, MdNAC16 and MdNAC32 did not respond to 1-MCP exposure. Additionally, the 13 MdNAC genes identified displayed differential tissue-specific expression patterns. These results suggest that NAC TFs play an important role in the regulation of apple development via both ethylene-dependent and -independent mechanisms.

Keywords: Malus domestica; NAC TFs; ethylene; fruit development; storage

Published: March 31, 2018  Show citation

ACS AIP APA ASA Harvard Chicago Chicago Notes IEEE ISO690 MLA NLM Turabian Vancouver
Zhang Q, Li T, Zhang L, Dong W, Wang A. Expression analysis of NAC genes during the growth and ripening of apples. Hort. Sci. (Prague). 2018;45(1):1-10. doi: 10.17221/153/2016-HORTSCI.
Download citation

References

  1. Aida M., Ishida T., Fukaki H., Fujisawa H., Tasaka M. (1997): Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant. Plant Cell, 9: 841-857. Go to original source... Go to PubMed...
  2. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W. (1997): Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research, 25: 3389-3402. Go to original source... Go to PubMed...
  3. Bapat V.A., Trivedi P.K., Ghosh A., Sane V.A., Ganapathi T.R., Nath P. (2010): Ripening of fleshy fruit, molecular insight and the role of ethylene. Biotechnology Advances, 28: 107. Go to original source... Go to PubMed...
  4. Berger Y., Harpaz-Saad S., Brand A., MelnikH., Sirding N., Alvarez J.P., Zinder M., Samach A., Eshed Y., Ori. N. (2009): The NAC-domain transcription factor GOBLET specifies leaflet boundaries in compound tomato leaves. Development, 136: 823-832. Go to original source... Go to PubMed...
  5. Christianson J.A., Dennis E.S., Llewellyn D.J., Wilson I.W. (2010): ATAF NAC transcription factors: regulators of plant stress signaling. Plant Signaling & Behavior, 5: 428-432. Go to original source... Go to PubMed...
  6. Gasic K., Hernandez A., Korban S.S. (2004): RNA Extraction from different apple tissues 432 rich in polyphenols and polysaccharides for cDNA library construction. Plant Molecular Biology, 22: 437-437. Go to original source...
  7. Hao Y.J., Song Q.X., Chen H.W. (2010): Plant NAC type transcription factor proteins contain aNARD domain for repression of transcriptional activation. Planta, 232: 1033-1043. Go to original source... Go to PubMed...
  8. Hao Y.J., Wei W., Song Q.X., Chen H.W., Zhang Y.Q., Wang F. (2011): Soybean NAC transcription factors promote abiotic stress tolerance and lateral root formation in transgenic plants. The Plant Journal, 68: 302-313. Go to original source... Go to PubMed...
  9. He X.J., Mu R.L., Cao W.H., Zhang Z.G., Zhang J.S., Chen S.Y. (2005): AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development. The Plant Journal, 44: 903-916. Go to original source... Go to PubMed...
  10. Fan J., Gao X., Yang Y.W., Deng W., Li Z.G. (2007): Molecular cloning and characterization of a NAC-like gene in "navel" orange fruit response to postharvest stresses. Plant Molecular Biology Reporter, 25: 145-153. Go to original source...
  11. Kikuchi K., Ueguchi-Tanaka M., Yoshida K.T., Nagato Y., Matsusoka M. Hirano H.Y. (2000): Molecular analysis of the NAC gene family in rice. Molecular and General Genetics, 262: 1047-1051. Go to original source... Go to PubMed...
  12. Kou X., Watkins C.B., Gan S. (2012): Arabidopsis AtNAP regulates fruit senescence. Journal of Experimental Botany, 63: 6139-6147. Go to original source... Go to PubMed...
  13. Liu Y.Z., Baig M.N.R., Fan R., Ye J.L., Cao Y.C., Deng X.X. (2009): Identification and expression pattern of a noval NAM, ATAF and CUC-Like gene from Citrus sinensis Osbeck. Plant Molecular Biology Reporter, 27: 292-297. Go to original source...
  14. Livak K.J., Schmittgen T.D. (2001): Analysis of relative gene expression data using real-time quantitative PCR and the 2 (-Delta Delta C(T)) method. Methods, 25: 402-408. Go to original source... Go to PubMed...
  15. Mao X., Zhang H., Qian X., Li A., Zhao G., Jing R. (2012): TaNAC2, a NAC-type wheat transcription factor conferring enhanced multiple abiotic stress tolerances in Arabidopsis. Journal of Experimental Botany, 63: 2933-2946. Go to original source... Go to PubMed...
  16. Martel C., Vrebalov J., Tafelmeyer P., Giovannoni J.J. (2011): The tomato MADS-box transcription factor RIPENING INHIBITOR interacts with promoters involved in numerous ripening processes in a COLORLESS NONRIPENINGdependent manner. Plant Physiology, 157: 1568-1579. Go to original source... Go to PubMed...
  17. Ma N.N., Feng H.L., Meng X., Li D., Yang D.Y., Wu C.G., Meng Q.W. (2014): Overexpression of tomato SlNAC1 transcription factor alters fruit pigmentation and softening. Plant Biology, 14: 351-360. Go to original source... Go to PubMed...
  18. Shan W., Kuang J.F., Chen L., Xie H., Peng H.H., Xiao Y.Y, Li X.P., Chen W.X., He Q.G., Chen J.Y., Liu W.X. (2012): Molecular characterization of banana NAC transcription factors and their interactions with ethylene signalling component EIL during fruit ripening. Journal of Experimental Botany, 63: 5171-5187. Go to original source... Go to PubMed...
  19. Sharp R.E., Poroyko V., Hejlek L.G., Spollen W.G., Springer G.K., Bohnert H.J., Nguyen H.T. (2004): Root growth maintenance during water deficits: physiology to functional genomics. Journal of Experimental Botany, 55: 2343-2351. Go to original source... Go to PubMed...
  20. Sisler E.C., Serek M., Dupilie E., Goren R. (1999): Inhibition of ethylene responses by 1-Methylcyclopropene and 3-Methylcyclopropene. Plant Growth Regulation, 27: 105-111. Go to original source...
  21. Souer E., van Houwelingen A., Kloos D., Mol J., Koes R. (1996): The No Apical Meristem gene of petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries. Cell, 85: 159-170. Go to original source... Go to PubMed...
  22. Su H.Y., S.Z. Zhang, Yuan X.W., Chen C.T., Wang X.F., Hao Y.J. (2013): Genome-wide analysis and identification of stress-responsive genes of the AM-ATAF1, 2-CUC2 transcription factor family in apple. Plant Physiology and Biochemistry, 71: 11-21. Go to original source... Go to PubMed...
  23. Zhu M.K., Chen G.P., Zhou S, Tu Y., Wang Y., Dong T.T., Hu Z.L. (2014): Tomato NAC (NAM/ATAF1/2/CUC2) transcription factor, SlNAC4, functions as a positive regulator of fruit ripening and carotenoid accumulation. Plant Cell Physiology, 55: 119-135. Go to original source... Go to PubMed...
  24. Toivonen P.M.A., Lu C.W. (2005): Studies on elevated temperature, short-term storage of 'Sunrise' Summer apples using 1-MCP to maintain quality. Journal of Horticultural Science & Biotechnology, 80: 439-446. Go to original source...
  25. Janssen B.J., Thodey K., Schaffer R.J., Alba R., Balakrishnan L., Bishop, R. et al. (2008): Global gene expression analysis of apple fruit development from the floral bud to ripe fruit. BMC Plant Biology, 8: 1-29. Go to original source... Go to PubMed...
  26. Wang A., Xu K.N. (2012): Characterization of two orthologs of Reversion-To-Ethylene Sensitivity1 in apple. Journal of Molecular Biology Research, 2(1). Go to original source...

This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International (CC BY NC 4.0), which permits non-comercial use, distribution, and reproduction in any medium, provided the original publication is properly cited. No use, distribution or reproduction is permitted which does not comply with these terms.